Filters

Africa Rice Center (AfricaRice)

Rice Biodiversity Centre for Africa

Most of the world considers rice Asian in origin, but rice also has deep African roots. While Oryza sativa was domesticated in Asia, the only other domesticated species, O. glaberrima, is African rice.

A genebank worker takes seed packets to the shelves in the new AfricaRice genebank in Mbe. Photo: Neil Palmer/Crop Trust

AfricaRice’s genebank currently contains almost 22,000 accessions, 85% of which originated in Africa. In addition to the two cultivated rice species, these include the five African crop wild relatives. Long-term conservation is carried out at its new genebank at Bouaké, Côte d’Ivoire.

Characterisation and evaluation of crop diversity are major activities at AfricaRice, with special attention being given to screening for resistance to major diseases and environmental stresses. As a result, genes for resistance to diseases and pests such as rice yellow mottle virus (RYMV), blast and African rice gall midge are now identified. The GRU is collaborating in studies to use high-throughput precision phenotyping to identify further useful traits. Early flowering and tolerance of stagnant flooding are traits that are also being explored in the collections.

Other important activities include the restoration of lost crop diversity to countries affected by war, provision of conservation services to NARS, and training and capacity building.

A formal germplasm health unit is in the process of being set up.

Key Staff

Genebank Manager: Marie-Noelle Ndjiondjop
Key staff: Genebank researchers: Fatima Bachabi, Dro Daniel Tia, Goungoulou Alphonse Junior, Kpeki Bienvenu.

Rice

Key performance indicators of CGIAR genebanks, 2012-2021

HINT: Use the search key to filter the data. For descriptions of performance indicators, click here.
Indicator201320142015201620172018201920202021
1. Total number of accessions19,98319,98319,95421,30021,30021,30021,30021,81519,699
2. Total number of accessions that are currently available14,00015,59616,37117,96918,88919,42114,00915,45216,807
3. Number of seed accessions19,98319,98319,95421,30021,30021,30021,30021,81519,699
4. Number of vegetatively-propagated accessions000000000
5. Number of live plant accessions000000
6. Number of seed accessions held in long-term storage and safety duplicated at two levels5,3825,5368,04610,45313,14413,14413,74815,83017,933
7. Number of vegetatively-propagated accessions in cryopreservation or safety duplicated as in vitro000000000
8. Number of wild species accessions130130304040

Genebank operations, 2012-2021

HINT: Use the search key to filter the data
Indicator2012201320142015201620172018201920202021
1. Number of accessions with passport & characterization data available.......21,30021,30021,815
2. Number accessions received45124487112717102473323492
3. Number accessions regenerated2371,8181,59771216492053202,9362,039
4. Number accessions multiplied1,8007351,4122,0864,1367183,7004,6298,7263,287
5. Number accessions health tested4505955471,2767001,0641,705359913,287
6. Number accessions cleaned4505955471,276700002,0002,4821,780
7. Number accessions viability tested1,2002,5003,5966,9846,9724,0751,7309,9928,9568,387

Number of samples distributed to users within and outside the CGIAR, 2012-2021

HINT: Use the search key to filter the data. For descriptions of performance indicators, click here.
Indicator201320142015201620172018201920202021
1. Total number external germplasm requests978690761622232543
2. Number of samples distributed within the CGIAR8,14911,3891,0733,6823969592,9962,349938
3. Number of samples distributed outside the CGIAR5,4009,1468687216314465017032,078
4. Total number of samples distributed13,54920,5351,9414,4031,0271,4053,4973,0523,016
5. Number of accessions distributed within the CGIAR4,3701,8029412,8923969511,7571,635925
6. Number of accessions distributed outside the CGIAR2,0723,9353784916312775016972,078
7. Total number of accessions distributed6,4425,7371,3193,3831,0271,2292,2582,3323,003
8. Total number of accessions distributed outside the CGIAR with SMTA6312775016972,078
9. Total number of unique accessions distributed outside the CGIAR with SMTA6312084746142,078

Genebank Platform publications, 2017-2020

Recent publications with at least one CGIAR genebank staff as author. HINT: Use the search key to filter the data.
AuthorsArticle titlePublication nameURL
Cubry, P., Tranchant-Dubreuil, C., Thuillet, A.-C., Monat C., Ndjiondjop, M.-N., Labadie, K., Cruaud, C., Engelen, S., Scarcelli, N., Rhoné, B., Burgarella, C., Dupuy, C., Larmande, P., Wincker, P., François, O., Sabot, F., Vigouroux, Y.The rise and fall of African rice cultivation revealed by analysis of 246 new genomes.Current BiologyREAD
Lv, S., Wu, W., Wang, M., Meyer, R.S., Ndjiondjop, M.-N., Tan, L., Zhou, H., Zhang, J., Fu, Y., Cai, H., Sun, C., Wing, R.A., Zhu, Z.Genetic control of seed shattering during African rice domestication.Nature PlantREAD
Ndjiondjop, M.N., Alachiotis, N., Pavlidis, P., Goungoulou, A., Kpeki, S.B., Zhao, D., Semagn, K.Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice.Theoretical and Applied Genetics: International Journal of Plant Breeding ResearchREAD
Ndjiondjop, M.N., Semagn, K., Sow, M., Manneh, B., Gouda,A.C., Kpeki, S.B., Pegalepo, E., Wambugu, P., Sie, M., Warburton, M.L.Assessment of genetic variation and population structure of diverse rice genotypes adapted to lowland and upland ecologies in africa using SNPs.Frontiers in Plant ScienceREAD
Ndjiondjop, M.N., Semagn, K., Zhang, J., Gouda, A.C., Kpeki, S.B., Goungoulou, A., Wambugu, P., Dramé, K.N., Bimpong, I.K., Zhao, D.Development of species diagnostic SNP markers for quality control genotyping in four rice (Oryza L.) species.Molecular breeding : new strategies in plant improvementREAD
Shaibu, A.A., Uguru, M.I., Sow, M., Maji, A.T., Ndjiondjop, M.N., Venuprasad, R.Screening African rice (Oryza glaberrima) for tolerance to abiotic stresses: II lowland drought.Crop ScienceREAD
Ndjiondjop, M.N., Wambugu, P., Sangare, J., Gnikoua, K.The effects of drought on rice cultivation in sub-Saharan Africa and its mitigation: A review.African Journal of Agricultural Research READ
Ndjiondjop, M.N., Alachiotis, N., Pavlidis, P. ,Goungoulou A, Kpeki SB., Zhao D, Semagn KComparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice.Theoretical and Applied Genetics: International Journal of Plant Breeding ResearchREAD
Monat, C., Pera, B., Ndjiondjop, M.N., Sow, M., Tranchant-Dubreuil, C., Bastianelli, L., Ghesquière, A., Sabot, F.De novo assemblies of three Oryza glaberrima accessions provide first insights about pangenome of African rice.Genome Biology and Evolution AdvanceREAD
Kam, H., Ndjiondjop, M.N., Sanou, J., Sow, M., Ouedraogo, I., Laing, M.Diversity assessment and geographical variability of rice landraces collected from Burkina Faso.International Journal of Development and SustainabilityREAD
Kam, K., Ndjiondjop, M.N., Liang, M.D., Ahmadi, N.Molecular characterisation and diversity analysis of burkina faso rice landraces using 23 microsatellite markers and establishment of a core collection.International Journal of Current ResearchREAD
Ndjiondjop, M.N., Semagn, K., Gouda, A.C., Kpeki, S.B., Dro Tia, D., Sow, M., Goungoulou, A., Sie, M., Perrier, X., Ghesquiere, A., Warburton, M.L.Genetic variation and population structure of oryza glaberrima and development of a mini-core collection using DArTseq.Frontiers in PLant ScienceREAD
Ndjiondjop et al.Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian riceTheoretical and Applied GeneticsREAD
Agbeleye et al.Screening african rice (O. glaberrima steud.) for tolerance to abiotic stress. III. floodingSabrao Journal of Breeding and GeneticsREAD
Arnaud Comlan Gouda, Ndjiondjop MN, Gustave L. Djedatin, Marilyn L. Warburton, Alphonse Goungoulou, Sèdjro Bienvenu Kpeki, Amidou N’Diaye & Kassa SemagnComparisons of sampling methods for assessing intra- and inter-accession genetic diversity in three rice species using genotyping by sequencing Scientific reportsScientific ReportsREAD
Halewood, Michael, Nelissa Jamora, Isabel Noriega, Noelle Anglin, Peter Wenzl, Thomas Payne, Marie-Noelle Ndjiondjop, Luigi Guarino, P. Kumar, Mariana Yazbek, Alice Muchugi, Vania Azevedo, Marimagne Tchamba, Chris Jones, Ramaiah Venuprasad, Nicolas Roux,Germplasm Acquisition and Distribution by CGIAR GenebanksPlantsREAD
McCouch, S. , Navabi, K. , Abberton, M. , Anglin, N. L. , Barbieri, R. L.* , Baum, M. , Bett, K. , Booker, H. , Brown, G. L. , Bryan, G. L. , Cattivelli, L. , Charest, D. , Eversole, K. , Freitas, M. , Ghamkhar, K. , Grattapaglia, D.* , Henry, R. , InglisMobilizing Crop BiodiversityMolecular PlantREAD
Hayba Badro,Marie-Noelle Ndjiondjop, Agnelo Furtado & Robert Henry.SNPs linked to key traits in interspecific crosses between African and Asian ricePlantsREAD